rs30939051 SNP Detail

Summary

• ID
  rs30939051
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89261755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGAGCC CCGAGTGTTT
  TCAGCAGCCT CCCTACCAGG CAGAAGCAGA TATGGCCTCT CTAGCTCTCT CACCTGTGAG
  GAGGCTTCAT TCTGGGAGTT TCTCACTCCC CAGCCTGAGT CCTCTGAGCC CACTGCCACA
  GGAATAGAAG GGACGAGGAA GTTCTGCTAA GCCCCGGCAG CATGCATTCC TCTGGACTTG
  R
  TGGCAGGAGA AGGCCACCTG TGCCACAAGG GTGAGAGCAG ATGCTTCTCT GTAAGAAAAT
  CACCTTCTGT AACAACAAAG GAAGGAAAAT TAGTCCTGTG CAGAGAAAGA AAGAATTCAG
  TCCCCATGCA GGCCGTTCTC GTTCCTCTCC TGGTGTGGCA TCTCCATTGT CATTGATATC
  TTCATGGCAG CTCTTCTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
ss47999663	NES11910710	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	G	G		G	A
ss133371425	ENSMUSSNP1314069	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
rs30939051					SNP	A	A	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999663	NES11910710	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89261755 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr379731	regulatory region 379731	179 bp upstream
Rr634091	regulatory region 634091	1502 bp distal
Rr634092	regulatory region 634092	422 bp proximal
Rr634093	regulatory region 634093	1338 bp proximal
Rr634094	regulatory region 634094	1564 bp proximal