rs30938473 SNP Detail

Summary

• ID
  rs30938473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89234588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAATAAA CCCCTTCTGG
  AAAAGAAGGA CCGCAGAGGC CTGTGATGAA AGTTAAGCCC AGGGAGAAGT AGAGGAAATA
  CGTGGATGGA CAGTTTTACA GGTCAGTCCT CTGGAGGATG TGTAGCCATC CCCAGTGGCT
  ACCACGCAAA CTCAACAGGG CTACACCGGT ATGGTGTGCA GGCAGAAGCC AGCCTGGGTG
  Y
  AGCCTACTGC AGGAAGTCAG GAAACTGTGG CTCACGTAAT GACATCCTGT CTAAGTACCA
  ATTCCACCCA GCACAGGCTT GCCACTTGCC AGTGTGGCTC CTGTTCCCAG TGGTTCCAGA
  GAAGTTGGCC ATCTATGACT TCACATGAAG TCTCTGGAGT GTTGAACGTT ATCCACTAAT
  TAAAACTCTT CCAGTGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47999404	NES11912832	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30938473					SNP	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999404	NES11912832	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89234588 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	131 bp downstream
Gm66553	predicted gene, 66553	within coordinates
Rr634087	regulatory region 634087	1156 bp distal
Rr634088	regulatory region 634088	586 bp proximal
Tssr62001	transcription start site region 62001	640 bp downstream