rs30938469 SNP Detail

Summary

• ID
  rs30938469
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89234426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT GGAAAAGAAG GACCGCAGAG
  S
  CCTGTGATGA AAGTTAAGCC CAGGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47999400	NES11912830	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	G	C	C	C	C	C		C	C	C		C
ss133370817	ENSMUSSNP6637289	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss321851702	CHEV_6_89207438	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30938469					SNP	C	C	C	G	G	C	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999400	NES11912830	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89234426 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	293 bp downstream
Gm66553	predicted gene, 66553	within coordinates
Rr634087	regulatory region 634087	994 bp distal
Rr634088	regulatory region 634088	748 bp proximal
Tssr62001	transcription start site region 62001	802 bp downstream