rs30938467 SNP Detail

Summary

• ID
  rs30938467
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89234358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGTACA GACCTAACCC
  AGCTCTACCA GGCTCTCCCA TACCTTGATT AATAGATGGG GCCATTGCTC ACGCCCAGGC
  TCCCTAGCTG AGCCTCAGCT TCTCATCCTC CTACAATGGT TGGCTGGCTC ACTCCATGGC
  AGCCTCTGCA GACAGCAAGT TCTTATGCAT GTTTCCCAGT GCCCCTTGGC TAAACCAAGT
  M
  ATAAGGCCGG GCCTATTCCA AATGTGAGTA AGTAATAAAC CCCTTCTGGA AAAGAAGGAC
  CGCAGAGGCC TGTGATGAAA GTTAAGCCCA GGGAGAAGTA GAGGAAATAC GTGGATGGAC
  AGTTTTACAG GTCAGTCCTC TGGAGGATGT GTAGCCATCC CCAGTGGCTA CCACGCAAAC
  TCAACAGGGC TACACCGGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47999398	NES11912829	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30938467					SNP	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999398	NES11912829	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89234358 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	361 bp downstream
Gm66553	predicted gene, 66553	within coordinates
Rr634087	regulatory region 634087	926 bp distal
Rr634088	regulatory region 634088	816 bp proximal
Tssr62001	transcription start site region 62001	870 bp downstream