rs30938465 SNP Detail

Summary

• ID
  rs30938465
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89233891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCTCAA CAGTTGGAAG
  AGCTGAAAGT GATCTGCCTG TACACAGCAA GAGGCAGGCA GTGGCCTTGG TGGAGACCTG
  AGAAGCCTGT GTCTGGGACA TCTGAAAGCC AGAGTGCTGC ACAGGACAAC GGACAGAGCA
  TCAGGGATGT GAGCTGTGTG GGGGCTGCCA TAATTAAGGC CAACAGGAAA CAGGCACACC
  S
  AGCAAGCGTT ACCCAGCAGA GGATGATGCG ACCCCCAGAA GTCTTCCCAG GGGCCTGGTA
  CTAGAAAGCG AACCCCATCA TACAGAACCA GAGGGGCCCT GAGATCCTCT GCTGGTACTG
  GAAAAGGCCA GCGTGAAAAG GAGCCCTAAC TTCCTTTTTC CAGCAGAATC AGCTGACCTG
  TGACATAAAC ATAATGAATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47999396	NES11912828	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30938465					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999396	NES11912828	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89233891 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	828 bp downstream
Gm66553	predicted gene, 66553	within coordinates
Rr634087	regulatory region 634087	459 bp distal
Rr634088	regulatory region 634088	1283 bp proximal
Tssr62001	transcription start site region 62001	1337 bp downstream