rs30938281 SNP Detail

Summary

• ID
  rs30938281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27369630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATACTC CCAGAGGATG
  GTCCAATATT ACCAATTCCT TAATTGATGT TCTGTCTTTT CAGGTATGTT GAGTTGACAA
  CTGAAATTGA CTATGTCATT GTGTAAGTGT CAAGGAATAA AAAAATACTA TTATAAAAGA
  AAGAGAAACA AAATGTGGCT ATTAACACAC AGGCAAAGGA ATATGACTAT TTGGTTTATG
  Y
  TGTTTTTACA GGTCACACAG ATTGCTCTTG ATTCCCTTTC AAAAAAAAAA AAAATAAAAG
  CAAAATGGAA ACGCCATTTT AAACTCCCAC GTCAGTAAAA CGAGGCAATG GTTGGGGCTG
  GGGAGACGGT AAAGTGTTCT CTGTGTGAGC ACGAGGACCT TAGCTTGGAT TACCAGCACT
  CACAGGTGGG CCTGGTGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45482092	mCV24242156	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss134703850	ENSMUSSNP5900486	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30938281					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27369630 () rs orientation: forward

Symbol	Name	Function Class
Rr574391	regulatory region 574391	430 bp distal
Rr574392	regulatory region 574392	1243 bp proximal
Tnfsf10	tumor necrosis factor (ligand) superfamily, member 10	1596 bp upstream
Tssr846	transcription start site region 846	1605 bp upstream
Tssr28624	transcription start site region 28624	1415 bp upstream
Tssr28625	transcription start site region 28625	1538 bp upstream
Tssr28626	transcription start site region 28626	1578 bp upstream
Tssr28627	transcription start site region 28627	1625 bp upstream
Tssr32848	transcription start site region 32848	1499 bp downstream