rs30937199 SNP Detail

Summary

• ID
  rs30937199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40621230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTC CTGGTCAATT CTGAGATGCC
  Y
  GCAGAATATT TTTCCTATTG TCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45480890	mCV22786325	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss135039630	ENSMUSSNP6002663	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss320728261	CHEV_3_40470722	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30937199					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40621230 () rs orientation: forward

Symbol	Name	Function Class
Intu	inturned planar cell polarity protein	Intron
Rr575841	regulatory region 575841	362 bp distal
Rr575842	regulatory region 575842	within coordinates