rs30936473 SNP Detail

Summary

• ID
  rs30936473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89258288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACACTGA CAGCTCACAG
  GATCATCTAC CCCATAGACA GTCAGTGAAA CCCCTCACAA AGGCGTTACC TCCCTCTGAC
  CCAAGATGGT CCAGGAGTCA CCATCTTCAT TTCAGAGGAG AGAAGCTTAA GGACCAGAGG
  ACCAGAGGGG TGGGCAGCAG AGGGTAAACT GGGATGTCTA CTGCTCCCTT TGTGACCTCT
  Y
  TTAAGATGGT CTTTCAGGCT CTGCCGTGCA CCCATGTCTA AACATACTTC TCCCAACTCT
  ACCTCTCCCT TATCTCCACC CAGAGGGTAG CTGAGAATCA AGTTCCTAGA TGCAAGCCTT
  TACCCAGCTC TTCCTAGTGT CCAGGCAGAG CCTCACTCCA CCTGTGGGGA GAGGTGAGTG
  ACAGATGGAG GCAGTGCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	DBA/2J	MOLF/EiJ	PWD/PhJ
ss47999633	NES11911044	PERLEGEN	MM_PANEL2	f	SNP			T		C	C
ss133371320	ENSMUSSNP2743530	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	DBA/2J	MOLF/EiJ	PWD/PhJ
rs30936473					SNP	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999633	NES11911044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89258288 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr634089	regulatory region 634089	452 bp distal
Rr634090	regulatory region 634090	210 bp proximal
Rr634091	regulatory region 634091	1944 bp proximal