rs30936232 SNP Detail

Summary

• ID
  rs30936232
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67800979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGCATTG CTCCCTGAGG
  TGACAACAGC TTGCTTCCTT CTCTTTGTCA TTTTGCATGG TCTTCTTGCT CTTGGAGACC
  AGTATTGACT AATTATAAAA ACGGGTAGAT AAGCAAGTCA GAACCCACGA AGAAAAGCAA
  TTTTCTAAGA AATTAGTCCA AATCCATCCT TACCAGTGAA TGTTCAAATG GAGAGTCGGT
  W
  TGGGTATTTG AAAGTGGAGA CTTCTGAAAT AATAGCCAGG TAGTTGGAAA AGTCTAGGTT
  TGTGCTTACA CTGTCTGGTA GCTCCTTGCA CTTTAAACAA GGTGGTAAAT AGCCTCATTA
  TTTTATATTG ACTAATCATT ATTTTTTCTT CATGATATTG ACTATAAAAT AAAAAAGGTA
  TTTATTTTCT TTGAATAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46999515	NES10771633	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30936232					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46999515	NES10771633	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67800979 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	Intron
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577963	regulatory region 577963	1404 bp distal
Rr577964	regulatory region 577964	524 bp distal
Tssr29450	transcription start site region 29450	1491 bp downstream
Tssr29451	transcription start site region 29451	1420 bp downstream