rs30936224 SNP Detail

Summary

• ID
  rs30936224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67799818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATCCCTA AAGATCTCTC TCTCTCTTGA ATAACATGCA
  TGCAAAAGCC GGTGAAAGGG GGCTTACAGA CCAGGGGATT AATTGCAGCT CTTGGTGTGC
  R
  TGTGCATGCA TGCTTGTTAA TAAAGGCATG TGTCTAGAAA TACGGGTAAT TTATGTGCAC
  ATATGTCTGT TCAGGCAGAT TTCACTAAGA GTCTTGTTGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss46999507	NES10771625	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30936224					SNP	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46999507	NES10771625	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67799818 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	Intron
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577963	regulatory region 577963	243 bp distal
Rr577964	regulatory region 577964	within coordinates
Tssr29450	transcription start site region 29450	330 bp downstream
Tssr29451	transcription start site region 29451	259 bp downstream