rs30936104 SNP Detail

Summary

• ID
  rs30936104
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68950176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTATAATTT TAAAAAATAC TATAGCAATA TCTAACTTTA
  AGTCTTTACT GATTTGTTCT GTTTCATTCT AATATAAACC TATTCCACAA AGCTATGAAA
  R
  AAGCTACTAA TGTAACTTAA CCAGGAATTG ACATGAGAAA TTATACTTTA ACTGATTTTT
  TAATACTATT TCTTAGGGCT GGAGAGATGG CTCAGCAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45480507	mCV25211975	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss135264676	ENSMUSSNP4092384	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320791797	CHEV_3_68846765	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30936104					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68950176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	1218 bp proximal
Rr578116	regulatory region 578116	1205 bp distal
Rr578117	regulatory region 578117	306 bp distal
Rr578118	regulatory region 578118	1049 bp proximal
Rr578119	regulatory region 578119	1902 bp proximal
Trim59	tripartite motif-containing 59	Intron
Tssr33523	transcription start site region 33523	1807 bp downstream
Tssr33524	transcription start site region 33524	1817 bp downstream
Tssr33525	transcription start site region 33525	1854 bp downstream