rs30935554 SNP Detail

Summary

• ID
  rs30935554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67798345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAAGAAG CACTGGGCTG
  TGAGAGGAGC TGGAAGTGCC CTGGGAAGTA TATGTTTATT AAACTTGCCT TAATGGTGAA
  TCTAGCTTGA TTTAGCAGTC TGGCCATGGA CTCCTTATCA ATAAACATAA ACACTGGGCT
  GTCCTTGACC TCAGGAGTTA AAGTAATAGA TAGTTTAATT GGTCATCATT AATTCCACCA
  Y
  AGATTTATTA CCGGTAAGTG TGGCCTTGGA AAGAATTACA CTCACATTCA CCCTGGGCGT
  TTTATCCCTG AGCTTCTCAG AGATGCTCGT GTAAAACAAA TAAGAACAGT TTCCCACCTC
  CTCCTCCTTC CTCCCATCAA TAGCATATTC ACTATCACAT CCAGCCAAAT GGCCATTTGC
  AAGGTTAGAT AGGTAGTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46999497	NES10771614	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30935554					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46999497	NES10771614	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67798345 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	1208 bp upstream
Iqschfp	Iqcj and Schip1 fusion protein	1220 bp upstream
Rr577963	regulatory region 577963	912 bp proximal
Rr577964	regulatory region 577964	1231 bp proximal
Tssr29450	transcription start site region 29450	1116 bp upstream
Tssr29451	transcription start site region 29451	1177 bp upstream