rs30934720 SNP Detail

Summary

• ID
  rs30934720
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67798117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTGCTC TCCTATCACC
  ACCAAGAGTG ATTCCAAGAT GGAAGAAGGG TGGCTTTGGG TACCAACATT CATATGTAAT
  TCTGATGTCC CCTGTAGAGT CTGCTCTGAG AATGACAGCG GCAAACTCTG AGGGAGGGTC
  TATGTGTCCT GCACAGTACC CAGCATCTAA CTCAACATTT TTGAATGGTT GAAGCAGATC
  S
  TTAGGAGAGA GAATAAAAAC TTCTGTACAG TAAGAAGCAC TGGGCTGTGA GAGGAGCTGG
  AAGTGCCCTG GGAAGTATAT GTTTATTAAA CTTGCCTTAA TGGTGAATCT AGCTTGATTT
  AGCAGTCTGG CCATGGACTC CTTATCAATA AACATAAACA CTGGGCTGTC CTTGACCTCA
  GGAGTTAAAG TAATAGATAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46999493	NES10771612	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30934720					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46999493	NES10771612	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67798117 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	1436 bp upstream
Iqschfp	Iqcj and Schip1 fusion protein	1448 bp upstream
Rr577963	regulatory region 577963	1140 bp proximal
Rr577964	regulatory region 577964	1459 bp proximal
Tssr29450	transcription start site region 29450	1344 bp upstream
Tssr29451	transcription start site region 29451	1405 bp upstream