rs30932634 SNP Detail

Summary

• ID
  rs30932634
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89236315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCTGGGG TAGAGCGGCG
  GTGCTGTTAT AAGAGGTTCA GAGCTTACTA AAGGGACCCA GAAAGCCAGG GATGCAGCAT
  GCTGGAATCA AGCTGCCCAC TTCTGCAAAA GCAGCTGTCT AGGTGTCCAG CATCCAGCAT
  TAGGGCCTGC TCTTATCTAA GATGAGCTAC CCTACCTGGA CAGGTCTGAG TTCCATCGCC
  W
  TCCAACCTGC CTTCTGTCAG GGTTAGTACA TGGCAGGGCT GCTCCTGAGT CCCCCAGGGA
  TGGCTAAGCT ATACCAGAAT CCCCTCTAGA GAGGAGAAAG GAGGAGCAGA TGGCTAGCTG
  GGACTGGGGT TCCTGGGAGC TCCTAGGGAA ACTGACACAG CGTGGAGGAG AAAATGACAG
  AGTGGAAATT AGGTCAAACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47999424	NES11912687	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30932634					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999424	NES11912687	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89236315 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	197 bp upstream
Gm66553	predicted gene, 66553	1524 bp downstream
Rr634088	regulatory region 634088	929 bp distal
Tssr62001	transcription start site region 62001	1056 bp upstream