rs30931457 SNP Detail

Summary

• ID
  rs30931457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67825090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATCTGCA TGCTAAGCAA
  CTAGTAGTGA GGAAACCACT ATGTATTTTG AATATCCTTT TATCCAGTTG TTATATCACT
  TCTAATTCTT TTGTTAATAA ATCACATAAC TCTTTGTAAA ACAATCATGC CCTAGAGCTG
  GGCATTCTGA TAGTTAATAC TGCCTTTCAA AACCACAGTA CCAGGTGAAA CCATGGAATG
  Y
  TAATGTTTTT CTATTTAAAA TTGTCAAAAT GGTTTGTGGT AGTTAATATT CTTTATCAGC
  TTGGCTAGAT TTAGAATCGC CACGTAAACA CAATTCTAAA GTGTGTTCTT GAGGCTATTT
  CCATGATGTT TAACTAGTGA TAAATATAAT GAGCCACCCT CCTGAAAGTG AGTGGCACCA
  TTGATAGACT GGGGGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46999749	NES10770277	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30931457					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46999749	NES10770277	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67825090 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	Intron
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577965	regulatory region 577965	961 bp proximal