rs30928971 SNP Detail

Summary

• ID
  rs30928971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138346070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCAGGGC CTCGCGAAGT
  AACAACCACT GTTAGGGAGT TTGCCAAAGG CATCAGAAGT CTTCTATATT TTGTATCATT
  GTTTTACCGC TAAGAAAATA ATCAGATAAG TACACCAAGA CCTTGAAAAT GTGTGAGTAT
  TAGCAACTGT CTAATGTTCA TCACAGAGGA GGCACTCAGT AAGCACCAAC AGCTGTGGAA
  Y
  TGGAGTAATG TTTCACTTCA GGCAAGTATC TCCGATTTCA CTTCAAGTGC AAAGGTGTCA
  CAGGATAACA GAAACACGGA GTATAACAGA ATCTATGCTG CCATCCCAGC TTAGAAGGGT
  ATGTAACTGG GCATGTGTGC ATGTTCAAAC ACAACAAAAC AAACCAGAAA GATATGTCCC
  CTGCATCTTA AGGTAGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss46998816	NES10883051	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs30928971					SNP	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998816	NES10883051	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138346070 () rs orientation: forward

Symbol	Name	Function Class
Gm65687	predicted gene, 65687	1303 bp downstream
Rr586170	regulatory region 586170	866 bp distal
Rr586171	regulatory region 586171	1823 bp proximal
Rr586172	regulatory region 586172	1909 bp proximal