rs30928758 SNP Detail

Summary

• ID
  rs30928758
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41355346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCGTTATCT TCCTAAGAAC CCATATGTGT AAATCTTCCC
  GTAGACCATA GCAAAAACAA GCAAAGCAAC AACAGAAAAA TAAAACAAAA CAAGTAAAAT
  R
  TTGGATGCAC ATGCCCTACC ATTCCACAAG ATAAAAGCCT GATGCTATAG TCTAAGATTG
  AAGTCAGCTA CTTGCCGTAC ACTGAGAGTA TTAAGTCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44978383	mCV25115312	ABI	CRAMUS_MOUSE	f	SNP	G	A					G	A
ss50825205	NES13542363	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	G	A		A	A	A		A	A	G		A
ss146402191	ENSMUSSNP1483957	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A						A
ss325809409	CHEV_19_41441397	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30928758					SNP	G	A	A	A	G	A	G	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50825205	NES13542363	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41355346 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr405959	regulatory region 405959	554 bp upstream
Rr547615	regulatory region 547615	1034 bp distal
Rr547616	regulatory region 547616	within coordinates
Rr547617	regulatory region 547617	236 bp proximal
Rr547618	regulatory region 547618	1399 bp proximal