rs30928296 SNP Detail

Summary

• ID
  rs30928296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138359065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACACATC TGTAGTGAGG
  AGGAAACTGA GGCTCAGACT TGGGAGTGCC TTACCCTGCC CTATGTAAGA TTTGTGGTAG
  CTCAAAATGA CCACGGTTGT AAAGAGTTAA GTAAGTGTAT TCTTTTCCCA GAATTTGCCT
  CACTGCAAGA TGCGCTAAGA GATAGTTCTC TGATTGTATA GAAAAGCCCA CACAATGTCT
  Y
  CGGTCCTTAA GTCTGCCCCT TAATGTCACT AAAGGTTAAC CAATGATAAA CTGCCCCCCA
  AAAATGTGTA AAAGGTGTGT GCTTTAGCTA CTCGGGGTCG CTTCTATTCT GATTTCAGAC
  CGACCCCAGC GTGCTGGATT AATAAACCTC TTGCTGTTTG CATCGATCTC CATCTCTGCG
  TCTCTGTGAG TGGGACATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ
ss46998890	NES10882519	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ
rs30928296					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998890	NES10882519	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138359065 () rs orientation: forward

Symbol	Name	Function Class
Rr586176	regulatory region 586176	1645 bp distal
Rr586177	regulatory region 586177	1203 bp distal
Rr586178	regulatory region 586178	266 bp distal
Rr586179	regulatory region 586179	379 bp proximal
Rr586180	regulatory region 586180	1526 bp proximal