rs30927452 SNP Detail

Summary

• ID
  rs30927452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138358225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAGCAAC TTTGTCCAAC
  AGCCCACCAA CACCCTGTCC TTGGCTAAGG GCAGCAGATT TCTGCTTTCT ACTGTGTCCA
  TTGGCAAAAG CACCATGGAA AGCCACTAGC AGTAATATAG TGTTACATCA CCATGATTCA
  CAGGGCACAG GGATTCAAAA GACAAAGAAT ATACAGGGGA AGTTTTCGGC ACTCTGAGCT
  Y
  TTCTGTGTAA AAATAGCCAC CAAATAATAA CAGTTGATGC CATAGGGACT GGCATTGAAA
  CAGTCTTCTT GTTCCTGGTT CTTACTTCTG TGAGGTGCAA GTCTTAGCTC ATTCTTGTTA
  GGTACTGCGC TGAAGTCATT TGGGATCCTT TGAGGGACTT CTGCAACTAG GGTTAAAACT
  TCTAGTATAC ATTATGACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ
ss46998886	NES10882557	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ
rs30927452					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998886	NES10882557	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138358225 () rs orientation: forward

Symbol	Name	Function Class
Rr586176	regulatory region 586176	805 bp distal
Rr586177	regulatory region 586177	363 bp distal
Rr586178	regulatory region 586178	298 bp proximal
Rr586179	regulatory region 586179	1219 bp proximal