rs30927450 SNP Detail

Summary

• ID
  rs30927450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138357971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACAGCAA CTCGAGAGTG
  GTTAGCATTG GCTAATGAGT AGAGTTTATA CAGCCAGTTT CGAGAAAGAT ACTGAATCGG
  AAACTGAAAA CCAGTAAAGA AATGGTTGCT ACTTGAGGAT GAACTGATGG CCCAAATTCA
  AAATGCACAC TAACTTTTAG ACCAGATTCC TAAGGAACTA GAAAGCAGGA AAATAGCTCA
  R
  GTTTTCTTCC TTTTGAAGTG CTTTTACTTT TTTTCTATGA AGTATTATTT TTTAATTAGC
  AACTTTGTCC AACAGCCCAC CAACACCCTG TCCTTGGCTA AGGGCAGCAG ATTTCTGCTT
  TCTACTGTGT CCATTGGCAA AAGCACCATG GAAAGCCACT AGCAGTAATA TAGTGTTACA
  TCACCATGAT TCACAGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ
ss46998884	NES10882556	PERLEGEN	MM_PANEL2	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ
rs30927450					SNP	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998884	NES10882556	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138357971 () rs orientation: forward

Symbol	Name	Function Class
Rr586176	regulatory region 586176	551 bp distal
Rr586177	regulatory region 586177	109 bp distal
Rr586178	regulatory region 586178	552 bp proximal
Rr586179	regulatory region 586179	1473 bp proximal