rs30927448 SNP Detail

Summary

• ID
  rs30927448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138357861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGGTGTC CCCCCACCCC
  CGCACCCCCC CCTCCCCCGG CAGAAACTGC ACCTTAGGAT GGATGGCCGC CTGTCTGTTA
  CTTATAGATA TTCTAATCAG AACCTTCCAT ACCACAGCAA CTCGAGAGTG GTTAGCATTG
  GCTAATGAGT AGAGTTTATA CAGCCAGTTT CGAGAAAGAT ACTGAATCGG AAACTGAAAA
  Y
  CAGTAAAGAA ATGGTTGCTA CTTGAGGATG AACTGATGGC CCAAATTCAA AATGCACACT
  AACTTTTAGA CCAGATTCCT AAGGAACTAG AAAGCAGGAA AATAGCTCAG GTTTTCTTCC
  TTTTGAAGTG CTTTTACTTT TTTTCTATGA AGTATTATTT TTTAATTAGC AACTTTGTCC
  AACAGCCCAC CAACACCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ
ss46998882	NES10882555	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ
rs30927448					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998882	NES10882555	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138357861 () rs orientation: forward

Symbol	Name	Function Class
Rr586176	regulatory region 586176	441 bp distal
Rr586177	regulatory region 586177	within coordinates
Rr586178	regulatory region 586178	662 bp proximal
Rr586179	regulatory region 586179	1583 bp proximal