rs30927446 SNP Detail

Summary

• ID
  rs30927446
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138357720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTTCCA AGAGATGTGG
  GAGACTCTCC TTTGCCTGGG CAGTCATCAT CTGACCCAAC AGAGAGCTAC AGTCTTATCA
  CATAACCAGA CAAGGAAAGG AACCACTTTT AGACACCTGC CAAGAAATGA CAATTCACTG
  CTGTAGGTGT CCCCCCACCC CCGCACCCCC CCCTCCCCCG GCAGAAACTG CACCTTAGGA
  W
  GGATGGCCGC CTGTCTGTTA CTTATAGATA TTCTAATCAG AACCTTCCAT ACCACAGCAA
  CTCGAGAGTG GTTAGCATTG GCTAATGAGT AGAGTTTATA CAGCCAGTTT CGAGAAAGAT
  ACTGAATCGG AAACTGAAAA CCAGTAAAGA AATGGTTGCT ACTTGAGGAT GAACTGATGG
  CCCAAATTCA AAATGCACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ
ss46998880	NES10882554	PERLEGEN	MM_PANEL2	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ
rs30927446					SNP	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998880	NES10882554	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138357720 () rs orientation: forward

Symbol	Name	Function Class
Rr586176	regulatory region 586176	300 bp distal
Rr586177	regulatory region 586177	within coordinates
Rr586178	regulatory region 586178	803 bp proximal
Rr586179	regulatory region 586179	1724 bp proximal