rs30927444 SNP Detail

Summary

• ID
  rs30927444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138357636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAATCAG GTCATGATGG
  CTCATTTTCC CCTTTGAGCT TCGTGGGCTT TTGTTTGTTC CTTTGTTCGT TTTTTATCTC
  TTGATCCCTT TCCAAGAGAT GTGGGAGACT CTCCTTTGCC TGGGCAGTCA TCATCTGACC
  CAACAGAGAG CTACAGTCTT ATCACATAAC CAGACAAGGA AAGGAACCAC TTTTAGACAC
  Y
  TGCCAAGAAA TGACAATTCA CTGCTGTAGG TGTCCCCCCA CCCCCGCACC CCCCCCTCCC
  CCGGCAGAAA CTGCACCTTA GGATGGATGG CCGCCTGTCT GTTACTTATA GATATTCTAA
  TCAGAACCTT CCATACCACA GCAACTCGAG AGTGGTTAGC ATTGGCTAAT GAGTAGAGTT
  TATACAGCCA GTTTCGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ
ss46998878	NES10882553	PERLEGEN	MM_PANEL2	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ
rs30927444					SNP	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998878	NES10882553	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138357636 () rs orientation: forward

Symbol	Name	Function Class
Rr586176	regulatory region 586176	216 bp distal
Rr586177	regulatory region 586177	within coordinates
Rr586178	regulatory region 586178	887 bp proximal
Rr586179	regulatory region 586179	1808 bp proximal