rs30927058 SNP Detail

Summary

• ID
  rs30927058
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114441273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGAGGAATT TTGAGAAAGC CATCTTTCCT TCTTCTGATA TCTCTGTGTC CCCTTTAAGA
  AATGGATTTC CAACGCCTCC ATGTGACTAT TTTTTTTATC CACAGCCTTA AGTAGGACTA
  TTCTTGGCTT AGAGCCTTAG TTCAAAGACA TAACACATTC TCACATGTGT AAGCTAGGAT
  CTGAATCTGT TTCAACTATA CAGACTTTAA TTTTATACAT TTCTAGAGGC ACATCCTGAA
  TCTAGCCCAG TAATCTAAGT TCATTCCTAC ATATACCCTT GATTTCAATC TCCAAGTTAA
  W
  GCAAGCAATT TTGAAAGCCT TGGGCTTATT CTACATCCTA ATGTCAATCA ATCTGCCAGT
  GCACCTAAGG CTCCCAAACA ACTGTTTACT GTTCAGTACA TTTTATTCAA TAATAGTAGC
  AGAAGTGATC TGCATTTTTA TTTTATGAAA TATGATAATT CTAGGAATTA TTTAAAGATT
  TTGGTTTTTA GTCTTTCTTA TATTACATCT AGACCACAGC TGCCAGAGCA TCCTCTCTTC
  CAAGTCCTTC CCTTCTCCCT ACCCAAATAC ACTTTTCTGG AATTTCCTTT CATAAAGAAA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46460246	mCV22907305	ABI	CRAMUS_MOUSE	f	SNP	T	T		A
ss138784421	ENSMUSSNP6620209	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30927058					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114441273 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv10-1	immunoglobulin heavy variable 10-1	1354 bp downstream
Tssr3975	transcription start site region 3975	1838 bp downstream
Tssr118082	transcription start site region 118082	1853 bp downstream