rs30925549 SNP Detail

Summary

• ID
  rs30925549
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:77577749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTTCTT CTGACTTCTA
  TAGGCACCTG CACTCATGTG CATATATTCA CACACATATA CACATAAACA GTAAAGGACT
  TAGATCTATA CAAAGAGTGT ATGCATAGAG AATTCAACCA GGTCGCACAG CACCACAGTA
  CACCCGGTCC AGGCACATAA CATTCCATAT TCTCACCAAG GCTCATCAGT GAATTGTGCA
  K
  GAAGAAGAAA ACAGCTCACT GCCTCTCAGT GTTGCACGAT TACCGTTTTA GTACCTAGAA
  TAAGGATTAA ACTTTTCTTA TGGTTCTGAA TTGTAGTTGA GTACAGAATC TATTTTCCAG
  TCCTATATAA GAATCCAAAG CATACTTAGA GGCATTTTTG GTGACAGATT TCTGAAGCAT
  AATTTTTCTA CTTAACCACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47997222	NES11898795	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	G		T	G	G	T
ss133319066	ENSMUSSNP1102243	ENSEMBL	ENSEMBL_Sanger	f	SNP		T										G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30925549					SNP	T	T	T	T	T	T	G	T	T	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47997222	NES11898795	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:77577749 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctnna2	catenin alpha 2			Intron
				mRNA-UTR
Gm38837	predicted gene, 38837			within coordinates
Rr632473	regulatory region 632473			1323 bp distal