rs30923757 SNP Detail

Summary

• ID
  rs30923757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:77575523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTTTCA GTGTAACAGA
  TGCACGCAGC TACTGCATCC ACTTTTAACT TAGATGTTCA TTCTAAGGGT CAGGCATGAA
  TATAGCCTTG AATTCAAGGC CAATGCAAGC TTTCAGAGGA AATTACATTT TGTTTACATG
  CAAATGTTTG CAGCCCTAAC ACTTCCCAGG AGTCTAAAAT TCATCTAAAC TTCACATCGG
  Y
  ATTCATACCT TTCCTGAATC TTTTACTTAG TCATAGTTTG ATTTTAAATC ACACTATACT
  GCGTACACAA AGAGGTTTCT ATATTTGTCT CTTCCAATAC CCATCTTTGT ACTTAATCAG
  TATACTCAGA GTAAATAAAT GTCTTCAAAG TTGATTATGA TATAGTCACA TAACAAAATA
  CTATGCAGTC AGGAAGCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47997200	NES11898965	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30923757					SNP	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47997200	NES11898965	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:77575523 () rs orientation: forward

Symbol	Name	Function Class
Ctnna2	catenin alpha 2	Intron
Gm38837	predicted gene, 38837	199 bp downstream
Rr632473	regulatory region 632473	882 bp proximal