rs30923661 SNP Detail

Summary

• ID
  rs30923661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138351120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTGCCT CCTGAGTGCT
  GGGATTAAAA GCATGGGCCA TCGCACCCAG CATGAAAACA ATAATTTAAA TAGACGGAAT
  GCTCCCCACT TCTGTGAGTT TGCAGCACCC ACTGTCACCA CTCTCGAGGG GTCCCGAGCT
  TGGGGAGATG AAAATACCTG CGGCTTATGT AGCCACTCAG TTCTCTCCCT CCGGAGGCTG
  Y
  GTATCTTTTC CAGAAAGTTC TCTAGGCTTG GCTTCAAGGC TTGCTGCCTT TTGCTTTCTC
  CACTGAGTCA CTCACACCAT GAAATGTCAG AGCAGCTGGC CAAACACCAA GGGCCTGGTT
  AAAACAATAA AGGCTTTCTG GAGCCTCCAG CGAGCTGATG TGAACGGTTG TTTCCTAAAC
  AAAACAATCC CATGGAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ
ss46998844	NES10882834	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ
rs30923661					SNP	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998844	NES10882834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138351120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13877	CpG island 13877	1079 bp distal
Gm43723	predicted gene 43723	1415 bp upstream
Rr586173	regulatory region 586173	within coordinates
Rr586174	regulatory region 586174	198 bp proximal
Rr586175	regulatory region 586175	1524 bp proximal