rs30923287 SNP Detail

Summary

• ID
  rs30923287
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67802102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAGAAA AGAATGCCAC
  TTCTGCCATT TGTCCCTGAT TATGACTTCT CACTCACTTT TGGAGGCTTG ATAGATCAGG
  TCTTTATTTT TAAAACCTAT TTATATGACT CCCACACTTG TGGTTAAACA AACACTTTCT
  CCTATGCAAT AATGTCCTCA TTTGAAGGTT GAGGGTGCTT TACCAAGTAT TTCAATTTTA
  M
  GCCTCACGTA TGTTAAAAAT ATAACTTGTC GGCTGACCAC GCATCTTCAA CTGAAGTCAC
  TCATTCTTTA ACCACTTACG AAGCACCACA CTGGCATACT GTCTCCTGGT CTAGGACGAA
  AGGGTGGGGA GGGGAGGCCT TTCTTCTAGG GAAACAGAGA GCATTTTTCT CCATAGCAGC
  CATGTGTGGA GGCACAAATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46999527	NES10771651	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30923287					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46999527	NES10771651	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67802102 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	Intron
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577964	regulatory region 577964	1647 bp distal