rs30918987 SNP Detail

Summary

• ID
  rs30918987
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156443610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG GCAGGGATGT CTCGGAGTTC
  S
  CTGTGGCCCA CGTGACAGGT GTGTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44977478	mCV23342413	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss145800292	ENSMUSSNP4433389	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320072526	CHEV_1_158546171	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30918987					SNP	C	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156443610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase			Coding-NonSynonymous
				Intron
Rr396424	regulatory region 396424			1296 bp downstream
Rr396425	regulatory region 396425			132 bp downstream
Rr421201	regulatory region 421201			1400 bp distal
Rr421202	regulatory region 421202			1197 bp distal
Rr421203	regulatory region 421203			within coordinates
Rr421204	regulatory region 421204			379 bp distal
Rr421205	regulatory region 421205			948 bp proximal
Tssr9572	transcription start site region 9572			178 bp downstream
Tssr9573	transcription start site region 9573			154 bp downstream
Tssr9574	transcription start site region 9574			107 bp downstream