rs30915622 SNP Detail

Summary

• ID
  rs30915622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138042063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGAGCCCC TCCGTTAGGA GGAACCACCT CAGAATCACT
  TGACAGTCTG TGGAAAGGCA GTGTCCTCAC AGTGCCTGGC ATCAGATGCT GCTTCTGCAG
  Y
  CTCTCATTAC TGTACTGTGA AGTGAGAATC CACCCCCAAC TTCCTTCAAG GTCAAACTTT
  GAACTTTGCA AGGAGAATGC TCGCTTGACA CAACTTCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46996986	NES10891633	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C		C	C		C
ss320979572	CHEV_3_137999266	CHEVERUD	SCREENING_POP	f	SNP							T			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30915622					SNP	T	C	T	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46996986	NES10891633	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138042063 () rs orientation: forward

Symbol	Name	Function Class
Rr586126	regulatory region 586126	within coordinates