rs30913578 SNP Detail

Summary

• ID
  rs30913578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138148939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGCCCCG CCCTTCCGGT
  ATTAGGCCCG CCTCCCAGCC GAGTCCCGCC CTACGCACAG CCACCTCCTC CCGCCCTCAC
  GTACGCCCCG CCTACATCGA AGGCCCGCCT CCCGCGCACA GCCCCTCCCC TCACGCACGG
  TCCAGCCCTC ACCCGGGTTC CGCTACACTC GTGAACCTTA GCGCTCGATC CCGAACTAGC
  R
  GCCATGGCGA ACCAGGTATG GAGGCGCGCG GTGGGCCGGA GCAGAGGAGG GGAACGCCCG
  GGTGGCCCGC TGCCGCCCGC CGGGGAAGGC GAGCGCAGCC GCAGCGAGGG CATGGAGGCT
  TTGTTTCGGC GCCGCGCTTG GAGAGCAGCT CTGCTTTCTG CTCTGCTCCG CCGGAGCCCG
  GTGGGCTGAG GCCCGCGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46997628	NES10890822	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30913578					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46997628	NES10890822	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138148939 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adh5	alcohol dehydrogenase 5 (class III), chi polypeptide			Intron
				mRNA-UTR
Cpgi13874	CpG island 13874			within coordinates
Gm64924	predicted gene, 64924			within coordinates
Rr398071	regulatory region 398071			within coordinates
Rr586135	regulatory region 586135			591 bp distal
Rr586136	regulatory region 586136			75 bp distal
Rr586137	regulatory region 586137			within coordinates
Rr586138	regulatory region 586138			375 bp proximal
Rr586139	regulatory region 586139			1230 bp proximal
Tssr31984	transcription start site region 31984			2 bp downstream