rs30913475 SNP Detail

Summary

• ID
  rs30913475
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67476579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGATAGCC ATATAGTTAA
  CACACAGATA GATGCATGCA AAACAGGAGA GAAAACAAAT CCTAGTGGAT GGGAAGGGGG
  CCATGGACAC AGAACAGTCA TAAAAGGCAT TTGAAAAGTA GATTTATTAA AATAAATTTA
  TATTTACTTA TTAAAATAAA TTTATTAATA TAAGTTTGGT CATTTGTGTT AGATATTGAG
  K
  GTGCTATTTT ATCCCCAGCA TGATATATGG GGATGTGAAA TACTCCCTAC AGGCTTATGT
  GTCTGAAGAC TTCATCCCCA GTTTGTTGGC ATTGTTTTGG TTCTGTGACA TTTCATAGAG
  TGTTTGGGCT GTGTGGCCTA GTAGCAGAAG TTAATGACTG GGGAAAACCT TAAAGGTGGT
  GACTATTTAG GGTCCCTTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46997425	NES10780788	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30913475					SNP	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46997425	NES10780788	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67476579 () rs orientation: forward

Symbol	Name	Function Class
4930402C01Rik	RIKEN cDNA 4930402C01 gene	1319 bp downstream
Rr577947	regulatory region 577947	640 bp distal
Rr577948	regulatory region 577948	752 bp distal