rs30913426 SNP Detail

Summary

• ID
  rs30913426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:157699675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAATGCT TGGCTTCCTG
  GTGACTTTTA AGAGATGTCC TATATACACA GTTTTGGACA TGTCAGGGTG GAGTAGGCAG
  CCTGGATGTA GGTAAAGATG GGAAGCTGGG TCAGGTAAAG TTCGTCGTAA TAAGTAGGTA
  ACTTTTTACA TGGGAGTGTG TGAGGGTTGG AAGTGTGGGT CGGGGTCGGA TGATTAATGA
  R
  GCATCCCTGC AAAGAACTGT TTGCTCTCTT TTGGATGCCT TTTTATCTGT GCCTGCATCT
  ATGATGTAAA CACTTTACAT GTATTATTGA GCAAGGCTAC TTGTATTTGC TTCTTTTCAA
  AGCAGTAACT TTTATCCAGT CAGAGATCAG AGAGGGTCCA GTGTGGCATG GACTGTGGAT
  TTTAATCCTG CTTTTCTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47496777	NES10301830	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30913426					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47496777	NES10301830	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:157699675 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd13c	ankyrin repeat domain 13c			Intron
				Noncoding-Transcript-Variant
Rr588086	regulatory region 588086			80 bp distal
Tssr32505	transcription start site region 32505			418 bp downstream
Tssr32506	transcription start site region 32506			386 bp downstream
Tssr32507	transcription start site region 32507			369 bp downstream
Tssr32508	transcription start site region 32508			307 bp downstream