rs30912210 SNP Detail

Summary

• ID
  rs30912210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104571659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCTAGA CAAGCAGTAA
  CTCCAGCCTG AGCTGTAGTC CCAACCCTGG GAAGGGCACA GTGAGGGTGG GGAAGTTATT
  TGATGCCAGC CAGGGAGGGT AAGGAAGAAA TCCCAAAAGA AACAGCAGGC AAGTAGGAAC
  AGAGCCTGCT CCCCCAGATG TCTGTAGCTC AGAGGTGGAG TGCTTACTTA GAATGCATAA
  Y
  ATAAAGCCCT GGATCGAATC AAAAAAGTTT AAGTCCTCAC ATCAACTATG TTTGCTTCTT
  TAGCCACTTT TCTACCCTAG GCTGGAATAC TTTTATTCCT CCCTCCCCGC TCCCTCTTCT
  CCTTCCTTCT TCCTTCTCAG CAGTTCTAGG GATGGAGCCC AACTGTTTGT CCCAGCCCAG
  CCCCTGGTCA GGGTCTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss45478884	mCV24812404	ABI	CRAMUS_MOUSE	f	SNP		T	C			T	T
ss46831962	NES10724933	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T			T	T	T	C
ss135570218	ENSMUSSNP7083492	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs30912210					SNP	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831962	NES10724933	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104571659 () rs orientation: forward

Symbol	Name	Function Class
Gm29561	predicted gene 29561	204 bp upstream
Rr582565	regulatory region 582565	1904 bp distal
Rr582566	regulatory region 582566	666 bp distal