rs30912009 SNP Detail

Summary

• ID
  rs30912009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:107513073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAGAGTTT AAAGGAAGAA ATAGGAAGAT GGTTATGATT
  CCTAAACATC AGCTTACCTG ATGAGTACAA TCTGAACACT AGGTACATGC AAGATGTCCC
  R
  TTAGGCCCTG AACCCAAGTA AAGATACAGC TCATATATCA AAGCTAGCAC AAGTATCTTG
  TGTCTATCAG TCATTGTAGT CATTGGTACT TTTCAGTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45978922	mCV23133344	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss51827510	NES14777323	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A	G	G	A	G	G	A	G
ss133484783	ENSMUSSNP6974942	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30912009					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51827510	NES14777323	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:107513073 () rs orientation: forward

Symbol	Name	Function Class
Lrrn1	leucine rich repeat protein 1, neuronal	Intron
Rr636003	regulatory region 636003	713 bp distal