rs30911084 SNP Detail

Summary

• ID
  rs30911084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30564326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGATTCGT GGGGCAGAGG
  ACTATGTCTG TGTGGGAGTC AATAAGCCTG CATTATAATT ATTATTAATG TTTTCTCCAC
  CATAAATTAC ATTGTCTGTA GGGGAACCGA GCGGAGGAGG GAAAAAAAAC TTTAGGATAA
  ATCTTTCCGT CTACACAAGA ACTAGGCTGA GGACTGGACC GTGAACGTGT TATCAGAAGG
  Y
  GAGAAGCATC TTGAACTTCA GAGCTCTGCC CTTGCTGCCG CTCTCTCCTT CTGAAGTTCC
  TGGGGCTTCC GCTTTGGATG AATAACCGGT TCTCGATTTT AGCTGTAATA CCAACGGTAG
  CTGCCATCCT AGGAACATTT CAGTAGTCTG TTTCCATCAA GTAGCAACAA TCGCCCTTGA
  TGCCCAGGTC CCGCCGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45479069	mCV24817496	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss134731502	ENSMUSSNP6360865	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30911084					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30564326 () rs orientation: forward

Symbol	Name	Function Class
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574781	regulatory region 574781	1771 bp distal
Rr574782	regulatory region 574782	1360 bp distal
Rr574783	regulatory region 574783	785 bp distal
Rr574784	regulatory region 574784	737 bp distal
Rr574785	regulatory region 574785	within coordinates
Rr574786	regulatory region 574786	1047 bp proximal
Tssr32895	transcription start site region 32895	668 bp upstream
Tssr32896	transcription start site region 32896	431 bp upstream
Tssr32897	transcription start site region 32897	383 bp upstream