rs30910479 SNP Detail

Summary

• ID
  rs30910479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147977339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTTAACGT GGGCGTACAG
  AAACAGTATT TGGTCAGCCC CTGATAGATC ACTAGCAGAA TGCAGTTAGT CACACTTACT
  TAGTGCAGTT GATATTAAGA GCTGGTAAGG GTTCCTCACG CTTACTTCTC GACTCCCACA
  TCAGCTGTAA CAGAGCATTC TCATTTTCCA CATGAAAGCC ACGGGGTCCG TTTCAGAGCA
  Y
  AGACCCAACA GACTCAACAC CAAAAGATTA AGTGCCTAAG CTGCCTGACA TTGCTTGTTT
  AGCTTTGCCC ACAGGATTTG AATTTGCCCT ACACTACTGA ACATCCTAAA GTAATTTAAC
  TGCATCCCAA ACACAACAGA AAGAAAGTCT ATTATGTTTC TCGCCTCTTT AGATAGCAGA
  TCCAGAGCAA TTTCTTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45479164	mCV22801881	ABI	CRAMUS_MOUSE	f	SNP		T	C			C		C
ss47037281	NES10848003	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C		C	C	C	C		C	C	C	C		C
ss136057881	ENSMUSSNP844521	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss321014833	CHEV_3_147934667	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30910479					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47037281	NES10848003	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147977339 () rs orientation: forward

Symbol	Name	Function Class
Rr587183	regulatory region 587183	253 bp proximal
Rr587184	regulatory region 587184	867 bp proximal