rs30910478 SNP Detail

Summary

• ID
  rs30910478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121662838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTGCCCAT CTGTCCATGG CACTAACTCA TCCAATAACT
  CTCATATCCA AATGGACAGC TCACCTCAGT TTCCTCCTTG AGCCCCAAAC CAGAAACCTA
  Y
  CTGGAAACCT TTGCAGGCAC ACACGGAGGT GTGCTTCTAT GATGATTCTA AATCCAGTTA
  AGTTGAAAAT TGAGATTTAA TGTTTTTTTT TGTTTGTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45479163	mCV22798715	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss135730728	ENSMUSSNP5459216	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320906532	CHEV_3_121572107	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30910478					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121662838 () rs orientation: forward

Symbol	Name	Function Class
Gm65477	predicted gene, 65477	within coordinates
Gm65480	predicted gene, 65480	1890 bp upstream
Rr584187	regulatory region 584187	1400 bp distal
Rr584188	regulatory region 584188	539 bp proximal
Rr584189	regulatory region 584189	1599 bp proximal