rs30907880 SNP Detail

Summary

• ID
  rs30907880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67335904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACTTTT TCTGCCTGTA
  CTCCTTTTCC AGGCCCCCTT CCTTTCCCCC AATAAACTTC CTCTTATACT AAGCTGTTTC
  CTCAGCGGGA ACACCTCACC TCGGCCGGCT GAGTTGCTCC TTCCTGCCTG ATCACTGCCA
  CCTGTTTATA AAAAACAACA TAAAGGCAGG CTTATTAAAA GGCAGCAGTC TGGCGAGTTG
  R
  CCAATCTATC AGGTGGAGGT CAGTAAAGTC ATTCGCCCAG GATAAAGCAA GGAGGTTTTA
  TAGTTTTGGG CCGTGTGGTG ATGAAACATG GGATTATGCC CATATAAGGT TAAAAAAAAG
  AAAAAAGAAA AAAAAAAAAA AAAAAAAAAG CTGAGCGCCC AGGCAGGCAC TCCCAGGTGG
  GTAGCGGGAA TCAGGAAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46995916	NES10784022	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30907880					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995916	NES10784022	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67335904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13245	CpG island 13245	1375 bp proximal
Gfm1	G elongation factor, mitochondrial 1	1544 bp upstream
Rr577916	regulatory region 577916	919 bp proximal
Rr577917	regulatory region 577917	1035 bp proximal
Rr577918	regulatory region 577918	1456 bp proximal
Tssr29439	transcription start site region 29439	1530 bp upstream