rs30907878 SNP Detail

Summary

• ID
  rs30907878
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67335864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTTATACT AAGCTGTTTC CTCAGCGGGA ACACCTCACC
  TCGGCCGGCT GAGTTGCTCC TTCCTGCCTG ATCACTGCCA CCTGTTTATA AAAAACAACA
  K
  AAAGGCAGGC TTATTAAAAG GCAGCAGTCT GGCGAGTTGG CCAATCTATC AGGTGGAGGT
  CAGTAAAGTC ATTCGCCCAG GATAAAGCAA GGAGGTTTTA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46995914	NES10784021	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30907878					SNP	T	T	T	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995914	NES10784021	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67335864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13245	CpG island 13245	1415 bp proximal
Gfm1	G elongation factor, mitochondrial 1	1584 bp upstream
Rr577916	regulatory region 577916	959 bp proximal
Rr577917	regulatory region 577917	1075 bp proximal
Rr577918	regulatory region 577918	1496 bp proximal
Tssr29439	transcription start site region 29439	1570 bp upstream