rs30907795 SNP Detail

Summary

• ID
  rs30907795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116761124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAC CTTGATTTAG TGTCAGTTTT
  Y
  CAGAAAGTAG TTACTTCTTT TTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45477757	mCV23494747	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss60435456	NES15933249	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C		T		C	T	C		T
ss135676602	ENSMUSSNP1034559	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss320897077	CHEV_3_116670393	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30907795					SNP	T	T	T	T	T	T	C	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435456	NES15933249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116761124 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			792 bp upstream
Cpgi13743	CpG island 13743			1118 bp proximal
Gm52613	predicted gene, 52613			within coordinates
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			840 bp distal
Rr583815	regulatory region 583815			271 bp distal
Rr583816	regulatory region 583816			668 bp distal
Rr583817	regulatory region 583817			702 bp proximal
Rr583818	regulatory region 583818			1373 bp proximal
Tssr35360	transcription start site region 35360			1063 bp downstream
Tssr35361	transcription start site region 35361			1088 bp downstream
Tssr35362	transcription start site region 35362			1153 bp downstream
Tssr35363	transcription start site region 35363			1201 bp downstream
Tssr35364	transcription start site region 35364			1237 bp downstream
Tssr35365	transcription start site region 35365			1297 bp downstream
Tssr35366	transcription start site region 35366			1315 bp downstream
Tssr35367	transcription start site region 35367			1352 bp downstream
Tssr35368	transcription start site region 35368			1453 bp downstream
Tssr35369	transcription start site region 35369			1494 bp downstream
Tssr35370	transcription start site region 35370			1537 bp downstream