rs30907350 SNP Detail

Summary

• ID
  rs30907350
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79795041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC ATCAGGCATG AGTGTGGTAC
  R
  CATCCACATA TGAAGACAAA CACTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45479028	mCV23428344	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss135376952	ENSMUSSNP5504875	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			G
ss320812432	CHEV_3_79691656	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30907350					SNP	A	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79795041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	1043 bp distal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	917 bp upstream
Rr375226	regulatory region 375226	460 bp downstream
Rr578606	regulatory region 578606	1794 bp distal
Rr578607	regulatory region 578607	1359 bp distal
Rr578608	regulatory region 578608	431 bp distal
Rr578609	regulatory region 578609	861 bp distal
Rr578610	regulatory region 578610	821 bp distal
Rr578611	regulatory region 578611	227 bp proximal
Tssr29602	transcription start site region 29602	1732 bp downstream
Tssr29603	transcription start site region 29603	1670 bp downstream
Tssr29604	transcription start site region 29604	1613 bp downstream
Tssr29605	transcription start site region 29605	1525 bp downstream
Tssr29606	transcription start site region 29606	1507 bp downstream
Tssr29607	transcription start site region 29607	839 bp downstream
Tssr29608	transcription start site region 29608	779 bp downstream
Tssr33752	transcription start site region 33752	1561 bp upstream
Tssr33753	transcription start site region 33753	1496 bp upstream
Tssr33754	transcription start site region 33754	912 bp upstream