rs30907258 SNP Detail

Summary

• ID
  rs30907258
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28423089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGAAAC ACTTTACAGA
  TACACTAGCA ATCCAGTTCA ATAGAGTCTC AGCTTAGCAA AAGCAGTGAT GTGACCTAGC
  AGAGACAACC AGGCCTCGGC CTTGGCACAA GTCAGCAAGA GGGACCAACA GGATCATCAG
  GAGAAGTTCT CAGCTGTGCC TCTCTCAGGG AAGTGAAGAT CAGGGAAGAC AGGCAGGCGG
  M
  CCACACGTGT TGCACAGCTA GCTTTACCAG CAAGCCAAGC ACTGTCTTGG TCATTCTGTG
  GACCCTCCAA ACATCATGTG TCCTCCACAT GCCTTGTTCA ACACGAGTCT TGCCTCAGCA
  CAGGCTTTAC CTCAGGACCA GTTTTGACTC AGTATGGGTC TCTAATCAGC CTGAGACTTC
  AGACGTGGCC AGAAACTGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45478254	mCV22687627	ABI	CRAMUS_MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs30907258					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28423089 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574568	regulatory region 574568			445 bp proximal
Rr574569	regulatory region 574569			809 bp proximal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant