rs30906652 SNP Detail

Summary

• ID
  rs30906652
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118455980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGAAGACT CCAGGTATGA TCAAGTATGC TTCAAGGCTG
  TGTCCTCAGC GGCTGCACGG AAAGCAGACG CAGACAGGAC TGCGTGGAAG AGACAAGCCC
  S
  GCAGAGTTAA ACAATAGAGG ATTACGACCA CCCGCAGGTA CTGGGTAAAC CAAACAGCCT
  CTGTGAACAG CTTTGAGGGG CCCAGATGAA AGGACCTGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45975880	mCV24802897	ABI	CRAMUS_MOUSE	f	SNP		C	G					C
ss48065608	NES11724101	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	G	G	G	C	G		C	G	G		G
ss321924623	CHEV_6_118429037	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30906652					SNP	C	C	G	C	G	G	G	C	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48065608	NES11724101	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118455980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17903	CpG island 17903	within coordinates
Rr637483	regulatory region 637483	698 bp distal
Rr637484	regulatory region 637484	within coordinates
Rr637485	regulatory region 637485	291 bp proximal
Rr637486	regulatory region 637486	1490 bp proximal
Rr637487	regulatory region 637487	1651 bp proximal
Tssr62662	transcription start site region 62662	218 bp downstream
Zfp9	zinc finger protein 9	Intron