rs30905672 SNP Detail

Summary

• ID
  rs30905672
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67354297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAACAAG CATCTACCAC
  CCAGATAGGG CACCAGTGAC AGAGCAAGCT GATGTACCCG CCTGAGTCCA TCAAACTTGG
  TGGGCCAGTG AGTTTACTGG GGCAGCCTGC AGGAGCATGG GTGGGCCTTG GACAGCTGTA
  GCACCCAGCA CTCAGCACCC AGCACCCAGC ACCCAGCCCT TTATGGTTGA TGCCTCCTGA
  K
  AGCTGCATCC GTGGCGGTCT CGGCCCACTT GGCAGGCTGC AGCACACACC CAGTGTCTGT
  TCTTCCCCAG AACCTTTCTG CTTCTCGCCA CAGGGAGGGA GGGGAGGGGG GGCTCCTGAA
  TCTTAACAAC TTTCTGAGCT CCCTGAGTCC GGCAAGGTTT CTTAGTTTCC TGAGTCTCAT
  GTGCCAGGCT CTTGTCTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46996106	NES10783786	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30905672					SNP	G	G	G	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46996106	NES10783786	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67354297 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gfm1	G elongation factor, mitochondrial 1			Intron
				Noncoding-Transcript-Variant
Rr577920	regulatory region 577920			344 bp proximal
Rr577921	regulatory region 577921			870 bp proximal
Rr577922	regulatory region 577922			1185 bp proximal