rs30905670 SNP Detail

Summary

• ID
  rs30905670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67354292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGGAA ACAAGCATCT
  ACCACCCAGA TAGGGCACCA GTGACAGAGC AAGCTGATGT ACCCGCCTGA GTCCATCAAA
  CTTGGTGGGC CAGTGAGTTT ACTGGGGCAG CCTGCAGGAG CATGGGTGGG CCTTGGACAG
  CTGTAGCACC CAGCACTCAG CACCCAGCAC CCAGCACCCA GCCCTTTATG GTTGATGCCT
  Y
  CTGAGAGCTG CATCCGTGGC GGTCTCGGCC CACTTGGCAG GCTGCAGCAC ACACCCAGTG
  TCTGTTCTTC CCCAGAACCT TTCTGCTTCT CGCCACAGGG AGGGAGGGGA GGGGGGGCTC
  CTGAATCTTA ACAACTTTCT GAGCTCCCTG AGTCCGGCAA GGTTTCTTAG TTTCCTGAGT
  CTCATGTGCC AGGCTCTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46996104	NES10783785	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30905670					SNP	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46996104	NES10783785	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67354292 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gfm1	G elongation factor, mitochondrial 1			Intron
				Noncoding-Transcript-Variant
Rr577920	regulatory region 577920			349 bp proximal
Rr577921	regulatory region 577921			875 bp proximal
Rr577922	regulatory region 577922			1190 bp proximal