rs30905406 SNP Detail

Summary

• ID
  rs30905406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:34075691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATT AGTGTGTAAC TGGCTTCGTT
  R
  GTGTTCCAGG TTTAAAACAT GATGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45479199	mCV22842367	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss134762075	ENSMUSSNP653566	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320700968	CHEV_3_33920464	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30905406					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34075691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	487 bp distal
Fxr1	FMR1 autosomal homolog 1	Intron
Gm43077	predicted gene 43077	1660 bp upstream
Rr575095	regulatory region 575095	1755 bp distal
Rr575096	regulatory region 575096	1424 bp distal
Rr575097	regulatory region 575097	318 bp distal
Tssr28785	transcription start site region 28785	1659 bp downstream
Tssr28786	transcription start site region 28786	1626 bp downstream
Tssr28787	transcription start site region 28787	1616 bp downstream
Tssr28788	transcription start site region 28788	1603 bp downstream
Tssr28789	transcription start site region 28789	1579 bp downstream
Tssr28790	transcription start site region 28790	1460 bp downstream
Tssr28791	transcription start site region 28791	1432 bp downstream
Tssr32968	transcription start site region 32968	1730 bp upstream