rs30905277 SNP Detail

Summary

• ID
  rs30905277
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151809944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACATGTA GCTGAATGTG
  TAAGAGTTCA TGTGAAGTAT GAGTATGTCT GCAATTGAGT GTACGTCAGT ATTTCTGTGT
  GTACACATGT ATGTGGAGTG TTTAGGTACG GCAAGTATAT GGACTATGTA TCTATGTATG
  GGTTTATGTA TATAAGTATT GTGAGTGTAT GGTATCATTG TGTGAATGTG TATTTGAGTA
  W
  AATTGTACAT GTATGGATAG CTGTATAGAA TGTATGAGCA CTGTGCATAT ATGTTGTATG
  TGAATGTGTG AGAGTATATG CATAGAGTAC ATAAGTTGAA CGTGTATATG ACAGTGTGAG
  TATTGTACAG TGTATGTGTG TGTGTTTCTC TGTGCATGTG TTAGTGCAAG TGTGTGCACG
  TGGTTATGTA TGTGGGTGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45478041	mCV24970914	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss136100787	ENSMUSSNP7152883	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss321028033	CHEV_3_151767271	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30905277					SNP	A	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151809944 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13939	CpG island 13939			1121 bp proximal
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			within coordinates
Rr587452	regulatory region 587452			492 bp proximal
Rr587453	regulatory region 587453			1220 bp proximal
Rr587454	regulatory region 587454			1286 bp proximal