rs30904975 SNP Detail

Summary

• ID
  rs30904975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86771962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAT GCGACTTCTT CCAACAGATG
  R
  CAGGCTCTCC TGGGAATGCC CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45977341	mCV22848143	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss51749401	NES14799926	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	A	A		G	A	A	G		G	A	G	G		G
ss133359411	ENSMUSSNP4535577	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss321847296	CHEV_6_86744974	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30904975					SNP	A	A	G	G	A	A	G	G	A	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749401	NES14799926	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86771962 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	1396 bp upstream
Cpgi17670	CpG island 17670	1107 bp distal
Rr633515	regulatory region 633515	1407 bp distal
Rr633516	regulatory region 633516	906 bp distal
Rr633517	regulatory region 633517	within coordinates
Tssr61864	transcription start site region 61864	1398 bp upstream
Tssr61865	transcription start site region 61865	1379 bp upstream
Tssr61866	transcription start site region 61866	712 bp downstream
Tssr61867	transcription start site region 61867	1588 bp downstream