rs3090457 SNP Detail

Summary

• ID
  rs3090457
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTAATT AATTAATAAT
  TAGTAAATTA ATTAAATGTT AGTTTTATAC TCATGTTTAA TATTTTTTAA TAATTGTAAG
  GTTGATTTAG CCCTCCCCTC TCCATATTAG TGTGGATTGT GAACAAAATA TACACTAATG
  AGCTCAGTGC TCAGTAATAA GGTAGTTGGT GTTTTAGTCA TTTTATTGTA TAAAATCCAA
  M
  ACTCAGGTCC CTTGAAAGGG TAGCACAGAG ACAGAAAGAG GGAGGGAGAG ATAGACAGAC
  AGAAAGAAGC AAATGTTTAA AGTATCAGTC CTAAACAAAC AAACAAACAA ACAAAAAACA
  AAAAATGAAA CAAAACAAAA CCAGGGACAG CCTGAGCATT GATTAAAAAG TCGAGTGTTC
  TCTGCAGGAA CAGTTCTGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
ss4327362	M-03828-4	WIMOUSESNPS	MITROCHE_POP	f	SNP	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
rs3090457					SNP	A	A	A	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400734 () rs orientation: forward

Symbol	Name	Function Class
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1840 bp downstream
Saa2	serum amyloid A 2	523 bp upstream
Tssr66700	transcription start site region 66700	522 bp upstream
Tssr66701	transcription start site region 66701	1043 bp upstream