rs3090457 SNP Detail

Summary

• ID
  rs3090457
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTAATT AATTAATAAT
  TAGTAAATTA ATTAAATGTT AGTTTTATAC TCATGTTTAA TATTTTTTAA TAATTGTAAG
  GTTGATTTAG CCCTCCCCTC TCCATATTAG TGTGGATTGT GAACAAAATA TACACTAATG
  AGCTCAGTGC TCAGTAATAA GGTAGTTGGT GTTTTAGTCA TTTTATTGTA TAAAATCCAA
  M
  ACTCAGGTCC CTTGAAAGGG TAGCACAGAG ACAGAAAGAG GGAGGGAGAG ATAGACAGAC
  AGAAAGAAGC AAATGTTTAA AGTATCAGTC CTAAACAAAC AAACAAACAA ACAAAAAACA
  AAAAATGAAA CAAAACAAAA CCAGGGACAG CCTGAGCATT GATTAAAAAG TCGAGTGTTC
  TCTGCAGGAA CAGTTCTGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
ss4327362	M-03828-4	WIMOUSESNPS	MITROCHE_POP	f	SNP	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
rs3090457					SNP	A	A	A	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400734 () rs orientation: forward

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	within coordinates
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1840 bp downstream
Saa2	serum amyloid A 2	523 bp upstream
Tssr66700	transcription start site region 66700	522 bp upstream
Tssr66701	transcription start site region 66701	1043 bp upstream